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Summary

Sci Name Melospiza_georgiana Melospiza_georgiana Melospiza_georgiana Melospiza_georgiana
Clade Birds
Lineage Birds
Assembly_ID GCF_028018845.1
# of retrocopies 157
# of Parental genes 75
Retroname Coord Strand Parental Conservation Has_ORF Selection
ACTA1P1 NC_080445.1:3376910-3379133 + ACTA1 Orthologus coding not_under_selection UCSC
ACTA1P2 NC_080450.1:1159735-1161251 - ACTA1 Orthologus coding not_under_selection UCSC
ACTBP1 NC_080432.1:55462838-55463168 + ACTB Orthologus coding under_selection UCSC
ACTBP2 NC_080435.1:35029497-35029808 + ACTB Orthologus coding under_selection UCSC
ACTG2P1 NC_080442.1:3745569-3748572 - ACTG2 Orthologus coding under_selection UCSC
ADIPOR1P1 NC_080431.1:80313321-80313582 - ADIPOR1 Orthologus non_coding - UCSC
AFF1P1 NC_080432.1:96544187-96544734 + AFF1 Orthologus non_coding - UCSC
ARF3P1 NC_080435.1:62605444-62605720 - ARF3 Orthologus coding under_selection UCSC
BCAS2P1 NC_080435.1:16381062-16382280 - BCAS2 Orthologus coding under_selection UCSC
BUD31P1 NC_080430.1:2616397-2617042 - BUD31 Orthologus coding not_under_selection UCSC
CACTINP1 NC_080433.1:20677201-20678968 + CACTIN Orthologus coding under_selection UCSC
CCDC85AP1 NC_080435.1:51847978-51848205 - CCDC85A Orthologus non_coding - UCSC
CFHP1 NC_080435.1:20757856-20758614 - CFH Orthologus coding under_selection UCSC
CFHP2 NC_080437.1:8054042-8054539 - CFH Orthologus coding not_under_selection UCSC
CPOXP1 NC_080464.1:14044865-14045141 - CPOX Orthologus non_coding - UCSC
CRNKL1P1 NC_080442.1:16969668-16971788 - CRNKL1 Orthologus coding under_selection UCSC
CTDP1P1 NC_080454.1:5321578-5321757 + CTDP1 Orthologus non_coding - UCSC
DNAJC15P1 NC_080430.1:90783105-90783475 - DNAJC15 Orthologus non_coding - UCSC
DNAJC15P2 NC_080430.1:98227249-98227430 + DNAJC15 Orthologus non_coding - UCSC
DNAJC15P3 NC_080431.1:42964994-42965410 + DNAJC15 Orthologus coding not_under_selection UCSC
DNAJC15P4 NC_080438.1:23443455-23443609 - DNAJC15 Orthologus non_coding - UCSC
DNAJC15P5 NC_080465.1:26019553-26019843 - DNAJC15 Orthologus non_coding - UCSC
ENO1P1 NC_080432.1:111792786-111793057 + ENO1 Orthologus non_coding - UCSC
FAM32AP1 NC_080447.1:3403662-3404168 - FAM32A Orthologus coding under_selection UCSC
GET4P1 NC_080465.1:19177898-19179693 - GET4 Orthologus coding not_under_selection UCSC
GLE1P1 NC_080442.1:4007278-4009163 + GLE1 Orthologus coding under_selection UCSC
HECW2P1 NC_080430.1:52750354-52750515 - HECW2 Orthologus non_coding - UCSC
HPCAL4P1 NC_080453.1:8045405-8045650 + HPCAL4 Orthologus coding not_under_selection UCSC
HSPA8P1 NC_080435.1:57055617-57056621 - HSPA8 Orthologus coding not_under_selection UCSC
KCNJ3P1 NC_080456.1:6778364-6778638 + KCNJ3 Orthologus coding not_under_selection UCSC
KINP1 NC_080433.1:74044427-74045637 - KIN Orthologus coding under_selection UCSC
LCKP1 NC_080453.1:9501056-9501717 - LCK Orthologus coding not_under_selection UCSC
LOC131080844P1 NC_080433.1:34143725-34144122 + LOC131080844 Orthologus coding not_under_selection UCSC
LOC131087329P1 NC_080436.1:25192200-25193142 + LOC131087329 Orthologus coding under_selection UCSC
LOC131091933P1 NC_080431.1:20651248-20651418 - LOC131091933 Orthologus non_coding - UCSC
LOC131091933P2 NC_080432.1:9931643-9931813 - LOC131091933 Orthologus non_coding - UCSC
LOC131091933P3 NC_080441.1:4563703-4563883 - LOC131091933 Orthologus non_coding - UCSC
LOC131091933P4 NC_080453.1:5549196-5549372 + LOC131091933 Orthologus non_coding - UCSC
LOC131092208P1 NC_080430.1:84832085-84832270 + LOC131092208 Orthologus non_coding - UCSC
LOC131092807P1 NC_080458.1:5072256-5073182 - LOC131092807 Orthologus coding under_selection UCSC
LOC131093342P1 NC_080451.1:3341012-3343448 + LOC131093342 Orthologus coding under_selection UCSC
LOC131093342P2 NC_080454.1:2150790-2153243 + LOC131093342 Specie-Specific coding not_under_selection UCSC
LOC131093342P3 NW_026652215.1:145673-147807 - LOC131093342 Orthologus coding under_selection UCSC
LOC131093342P4 NW_026652215.1:2888053-2890551 - LOC131093342 Orthologus coding under_selection UCSC
LOC131093342P5 NW_026652215.1:4225261-4227741 - LOC131093342 Orthologus coding under_selection UCSC
LOC131093342P6 NW_026652215.1:7912659-7914788 + LOC131093342 Specie-Specific coding under_selection UCSC
LOC131093342P7 NW_026652215.1:9321924-9324412 - LOC131093342 Specie-Specific coding under_selection UCSC
LOC131093382P1 NC_080454.1:7681652-7682046 + LOC131093382 Orthologus coding not_under_selection UCSC
LOC131094032P1 NC_080462.1:2846060-2846326 - LOC131094032 Specie-Specific non_coding - UCSC
LOC131094255P1 NC_080433.1:74059987-74060989 - LOC131094255 Orthologus coding under_selection UCSC
LOC131094385P10 NC_080458.1:2430978-2436134 - LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P11 NC_080459.1:594569-599679 - LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P12 NC_080463.1:442225-447360 + LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P13 NW_026652215.1:1534011-1541824 - LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P14 NW_026652215.1:2659229-2664373 - LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P15 NW_026652215.1:4166697-4171829 - LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P16 NW_026652215.1:5754617-5754852 + LOC131094385 Specie-Specific non_coding - UCSC
LOC131094385P17 NW_026652215.1:7467250-7472386 + LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P18 NW_026652215.1:8822403-8826415 - LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P19 NW_026652215.1:961479-961706 + LOC131094385 Specie-Specific non_coding - UCSC
LOC131094385P1 NC_080432.1:20516192-20520542 + LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P20 NW_026652215.1:9908858-9913993 + LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P21 NW_026652216.1:1419622-1424757 + LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P2 NC_080432.1:23640112-23640334 + LOC131094385 Specie-Specific non_coding - UCSC
LOC131094385P3 NC_080434.1:43857368-43862513 - LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P4 NC_080449.1:1399132-1404275 + LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P5 NC_080451.1:3327887-3333009 + LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P6 NC_080452.1:3133543-3138687 + LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094385P7 NC_080452.1:3794401-3799504 + LOC131094385 Specie-Specific coding under_selection UCSC
LOC131094385P8 NC_080454.1:3400757-3400992 - LOC131094385 Specie-Specific non_coding - UCSC
LOC131094385P9 NC_080458.1:1249877-1255033 - LOC131094385 Specie-Specific coding not_under_selection UCSC
LOC131094387P1 NC_080438.1:20856449-20857868 + LOC131094387 Orthologus coding under_selection UCSC
LOC131094387P2 NC_080458.1:1942314-1947770 + LOC131094387 Orthologus coding not_under_selection UCSC
LOC131094387P3 NC_080458.1:4275684-4276933 - LOC131094387 Specie-Specific coding not_under_selection UCSC
LOC131094387P4 NW_026652215.1:5563754-5568797 + LOC131094387 Specie-Specific coding not_under_selection UCSC
LOC131094397P1 NW_026652216.1:1520493-1520779 + LOC131094397 Orthologus non_coding - UCSC
LOC131094408P1 NC_080454.1:3484115-3484240 - LOC131094408 Orthologus non_coding - UCSC
LOC131094408P2 NC_080458.1:1810560-1810686 - LOC131094408 Specie-Specific non_coding - UCSC
LOC131094408P3 NC_080458.1:4474827-4474953 + LOC131094408 Specie-Specific non_coding - UCSC
LOC131094408P4 NC_080458.1:636885-637011 - LOC131094408 Specie-Specific non_coding - UCSC
LOC131094408P5 NW_026652215.1:1919321-1919447 + LOC131094408 Specie-Specific non_coding - UCSC
LOC131094408P6 NW_026652215.1:8622345-8622471 + LOC131094408 Specie-Specific non_coding - UCSC
LOC131094410P1 NC_080458.1:686031-691489 + LOC131094410 Orthologus coding not_under_selection UCSC
LOC131094410P2 NC_080459.1:1049284-1049466 - LOC131094410 Specie-Specific non_coding - UCSC
LOC131094410P3 NW_026652215.1:1219384-1219556 - LOC131094410 Specie-Specific non_coding - UCSC
LOC131094410P4 NW_026652215.1:2377186-2377344 - LOC131094410 Specie-Specific non_coding - UCSC
LOC131094410P5 NW_026652215.1:6713056-6718060 - LOC131094410 Specie-Specific coding not_under_selection UCSC
LOC131094410P6 NW_026652218.1:655603-655784 - LOC131094410 Specie-Specific non_coding - UCSC
LOC131094996P1 NC_080454.1:6850244-6850422 + LOC131094996 Orthologus non_coding - UCSC
LOC131095372P1 NW_026652215.1:4789864-4794046 - LOC131095372 Orthologus coding not_under_selection UCSC
LOC131095372P2 NW_026652215.1:926387-926949 - LOC131095372 Orthologus non_coding - UCSC
LOC131095372P3 NW_026652215.1:9453755-9457940 + LOC131095372 Specie-Specific coding under_selection UCSC
LOC131096319P1 NC_080439.1:25920455-25920696 - LOC131096319 Orthologus non_coding - UCSC
LOC131096328P1 NC_080433.1:20062621-20062996 + LOC131096328 Specie-Specific non_coding - UCSC
LOC131096328P2 NC_080451.1:3737101-3737631 + LOC131096328 Orthologus coding not_under_selection UCSC
LOC131096328P3 NC_080452.1:2799493-2799837 + LOC131096328 Orthologus non_coding - UCSC
LOC131096328P4 NC_080454.1:2667919-2668514 + LOC131096328 Orthologus coding not_under_selection UCSC
LOC131096388P1 NC_080461.1:3182103-3182291 - LOC131096388 Orthologus non_coding - UCSC
LOC131096393P10 NC_080463.1:818125-820045 + LOC131096393 Specie-Specific coding not_under_selection UCSC
LOC131096393P11 NW_026652215.1:10433166-10433512 - LOC131096393 Specie-Specific coding not_under_selection UCSC
LOC131096393P12 NW_026652215.1:154957-156306 - LOC131096393 Specie-Specific coding under_selection UCSC
LOC131096393P13 NW_026652215.1:2035654-2037574 - LOC131096393 Orthologus coding not_under_selection UCSC
LOC131096393P14 NW_026652215.1:4239575-4240929 - LOC131096393 Specie-Specific coding not_under_selection UCSC
LOC131096393P15 NW_026652215.1:5198193-5200097 - LOC131096393 Orthologus coding not_under_selection UCSC
LOC131096393P16 NW_026652215.1:7522873-7525067 - LOC131096393 Orthologus coding under_selection UCSC
LOC131096393P17 NW_026652215.1:8216351-8216698 + LOC131096393 Orthologus coding not_under_selection UCSC
LOC131096393P18 NW_026652218.1:53507-55655 + LOC131096393 Specie-Specific coding not_under_selection UCSC
LOC131096393P19 NW_026652218.1:629830-631925 - LOC131096393 Orthologus coding under_selection UCSC
LOC131096393P1 NC_080434.1:43846752-43848640 - LOC131096393 Orthologus coding not_under_selection UCSC
LOC131096393P2 NC_080452.1:3315788-3317052 - LOC131096393 Specie-Specific coding under_selection UCSC
LOC131096393P3 NC_080453.1:1855296-1856447 + LOC131096393 Specie-Specific coding not_under_selection UCSC
LOC131096393P4 NC_080453.1:2448851-2449999 - LOC131096393 Orthologus coding under_selection UCSC
LOC131096393P5 NC_080454.1:2142903-2144010 + LOC131096393 Specie-Specific coding not_under_selection UCSC
LOC131096393P6 NC_080454.1:4112785-4113132 + LOC131096393 Specie-Specific coding not_under_selection UCSC
LOC131096393P7 NC_080458.1:147579-148656 + LOC131096393 Orthologus coding not_under_selection UCSC
LOC131096393P8 NC_080459.1:1143926-1145839 - LOC131096393 Specie-Specific coding under_selection UCSC
LOC131096393P9 NC_080459.1:1684936-1686833 + LOC131096393 Specie-Specific coding under_selection UCSC
LOC131096396P1 NC_080459.1:1780611-1781052 - LOC131096396 Orthologus coding under_selection UCSC
LRRC4BP1 NC_080433.1:457144-457799 + LRRC4B Orthologus coding not_under_selection UCSC
MIA2P1 NW_026652215.1:3554905-3556263 - MIA2 Orthologus coding not_under_selection UCSC
NKAPP1 NC_080435.1:1981429-1981998 + NKAP Orthologus coding not_under_selection UCSC
PLRG1P1 NC_080452.1:9969507-9969941 - PLRG1 Orthologus non_coding - UCSC
PLXND1P1 NC_080452.1:9541910-9542069 - PLXND1 Orthologus non_coding - UCSC
PPHLN1P1 NC_080432.1:28953134-28953465 - PPHLN1 Orthologus non_coding - UCSC
PPHLN1P2 NC_080457.1:5029093-5029401 - PPHLN1 Orthologus non_coding - UCSC
PPHLN1P3 NC_080464.1:2855690-2856024 + PPHLN1 Specie-Specific non_coding - UCSC
PPHLN1P4 NW_026652215.1:4458888-4459148 + PPHLN1 Orthologus coding not_under_selection UCSC
PPHLN1P5 NW_026652215.1:6383207-6383518 + PPHLN1 Orthologus coding not_under_selection UCSC
PPIAP1 NC_080453.1:8275030-8275182 - PPIA Orthologus non_coding - UCSC
PPIL4P1 NC_080433.1:74051245-74052511 - PPIL4 Orthologus coding under_selection UCSC
PPIL4P2 NC_080443.1:4010431-4011607 - PPIL4 Orthologus coding under_selection UCSC
PRPF38AP1 NC_080431.1:437783-438235 - PRPF38A Orthologus coding not_under_selection UCSC
PRPF6P1 NC_080434.1:25211386-25214292 - PRPF6 Orthologus coding under_selection UCSC
PWWP3AP1 NC_080430.1:3012245-3012746 + PWWP3A Orthologus coding not_under_selection UCSC
PWWP3AP2 NC_080432.1:114480022-114482297 - PWWP3A Orthologus coding not_under_selection UCSC
PWWP3AP3 NC_080465.1:9918735-9920005 + PWWP3A Orthologus coding not_under_selection UCSC
RAB7AP1 NC_080464.1:10347844-10349024 + RAB7A Orthologus non_coding - UCSC
RANBP1P1 NC_080465.1:48272916-48273278 - RANBP1 Orthologus coding not_under_selection UCSC
RAP2CP1 NC_080439.1:749241-749604 + RAP2C Orthologus coding not_under_selection UCSC
RHOCP1 NC_080432.1:86548174-86548591 - RHOC Orthologus coding not_under_selection UCSC
RPS27AP1 NC_080453.1:4512899-4513449 + RPS27A Orthologus non_coding - UCSC
SAP30BPP1 NC_080441.1:5482682-5483223 + SAP30BP Orthologus non_coding - UCSC
SAP30P1 NC_080435.1:36561516-36561749 + SAP30 Orthologus non_coding - UCSC
SF3A3P1 NC_080435.1:61839595-61840803 - SF3A3 Orthologus coding not_under_selection UCSC
SLU7P1 NC_080443.1:1489916-1491552 - SLU7 Orthologus coding under_selection UCSC
SLU7P2 NC_080457.1:3193317-3195527 + SLU7 Orthologus coding under_selection UCSC
SNW1P1 NC_080442.1:4001222-4003344 + SNW1 Orthologus coding under_selection UCSC
SP1P1 NC_080430.1:31785353-31785597 - SP1 Orthologus coding not_under_selection UCSC
SP1P2 NC_080436.1:19906515-19906743 - SP1 Orthologus non_coding - UCSC
SP1P3 NC_080436.1:21239536-21239812 - SP1 Orthologus coding not_under_selection UCSC
TDP2P1 NC_080465.1:78418723-78419143 - TDP2 Orthologus non_coding - UCSC
TJP1P1 NC_080430.1:82852011-82852824 + TJP1 Orthologus non_coding - UCSC
TUBA8P1 NC_080433.1:1669920-1670822 + TUBA8 Orthologus coding not_under_selection UCSC
UBE2NP1 NC_080436.1:35579464-35579672 - UBE2N Orthologus non_coding - UCSC
USP48P1 NC_080431.1:24778599-24778776 + USP48 Orthologus non_coding - UCSC
YJU2P1 NC_080434.1:67454768-67455732 - YJU2 Orthologus coding under_selection UCSC
YWHAGP1 NC_080432.1:92203409-92203583 + YWHAG Orthologus non_coding - UCSC