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Summary

Sci Name Haemorhous_mexicanus Haemorhous_mexicanus Haemorhous_mexicanus Haemorhous_mexicanus
Clade Birds
Lineage Birds
Assembly_ID GCF_027477595.1
# of retrocopies 154
# of Parental genes 80
Retroname Coord Strand Parental Conservation Has_ORF Selection
ACTA1P1 NC_082360.1:11135923-11137468 + ACTA1 Orthologus coding under_selection UCSC
ACTBP1 NC_082343.1:44112633-44112963 + ACTB Orthologus coding under_selection UCSC
ACTBP2 NC_082346.1:35940672-35940994 + ACTB Orthologus coding under_selection UCSC
ARF3P1 NC_082346.1:64699476-64699681 - ARF3 Orthologus non_coding - UCSC
BCAS2P1 NC_082346.1:17178476-17179287 + BCAS2 Orthologus coding under_selection UCSC
BUD31P1 NC_082351.1:5097127-5098512 - BUD31 Orthologus non_coding - UCSC
CACTINP1 NC_082345.1:15230357-15232619 + CACTIN Orthologus coding under_selection UCSC
CCDC171P1 NC_082381.1:20999128-20999431 + CCDC171 Orthologus non_coding - UCSC
CCDC171P2 NC_082381.1:21519928-21520231 + CCDC171 Orthologus non_coding - UCSC
CCDC171P3 NC_082381.1:5427318-5427678 - CCDC171 Orthologus non_coding - UCSC
CFHP1 NC_082345.1:2208087-2208227 - CFH Orthologus non_coding - UCSC
CFHP2 NC_082346.1:12746597-12747460 + CFH Orthologus non_coding - UCSC
CFHP3 NC_082347.1:13051310-13051785 - CFH Orthologus coding not_under_selection UCSC
CPOXP1 NC_082380.1:5523351-5523795 - CPOX Orthologus non_coding - UCSC
CRNKL1P1 NC_082353.1:18649092-18651243 - CRNKL1 Orthologus coding under_selection UCSC
DNAJC15P1 NC_082341.1:101703907-101704085 + DNAJC15 Orthologus non_coding - UCSC
DNAJC15P2 NC_082341.1:93963974-93964219 + DNAJC15 Orthologus non_coding - UCSC
DNAJC15P3 NC_082342.1:70321612-70321899 - DNAJC15 Orthologus non_coding - UCSC
DNAJC15P4 NC_082349.1:8844557-8844751 + DNAJC15 Orthologus non_coding - UCSC
DNAJC15P5 NC_082381.1:48925069-48925257 - DNAJC15 Orthologus non_coding - UCSC
DNM2P1 NC_082361.1:5818869-5819085 + DNM2 Specie-Specific non_coding - UCSC
ENO1P1 NC_082343.1:91891737-91891960 + ENO1 Orthologus non_coding - UCSC
FAM32AP1 NC_082359.1:10736186-10736725 + FAM32A Orthologus coding not_under_selection UCSC
FAM32AP2 NC_082369.1:2780784-2781013 + FAM32A Orthologus non_coding - UCSC
GET4P1 NC_082381.1:41882770-41884206 - GET4 Orthologus coding not_under_selection UCSC
GLE1P1 NC_082353.1:3744689-3746562 - GLE1 Orthologus coding under_selection UCSC
HECW2P1 NC_082341.1:55963765-55963926 + HECW2 Orthologus non_coding - UCSC
HPCAL4P1 NC_082367.1:5277045-5277293 + HPCAL4 Orthologus coding not_under_selection UCSC
HSPA8P1 NC_082346.1:59012842-59013846 - HSPA8 Orthologus coding under_selection UCSC
HTATSF1P1 NC_082361.1:5438730-5439923 + HTATSF1 Specie-Specific coding under_selection UCSC
ISY1P1 NC_082342.1:111234305-111235152 - ISY1 Orthologus coding under_selection UCSC
ISY1P2 NC_082345.1:58207598-58208359 - ISY1 Orthologus coding not_under_selection UCSC
KINP1 NC_082345.1:1609343-1610584 + KIN Orthologus coding under_selection UCSC
LOC132322983P1 NW_026776055.1:5035-8620 + LOC132322983 Specie-Specific coding not_under_selection UCSC
LOC132324520P1 NC_082345.1:28859801-28860194 + LOC132324520 Orthologus coding not_under_selection UCSC
LOC132325622P1 NC_082343.1:117417814-117426224 - LOC132325622 Specie-Specific coding under_selection UCSC
LOC132332977P1 NC_082352.1:3073893-3074127 - LOC132332977 Specie-Specific non_coding - UCSC
LOC132332977P2 NC_082356.1:15134807-15135154 + LOC132332977 Orthologus non_coding - UCSC
LOC132334287P10 NC_082347.1:35902250-35902857 + LOC132334287 Specie-Specific coding under_selection UCSC
LOC132334287P11 NC_082353.1:1988168-1988418 - LOC132334287 Specie-Specific non_coding - UCSC
LOC132334287P12 NC_082353.1:38403-41785 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P13 NC_082356.1:13918963-13922355 + LOC132334287 Specie-Specific coding under_selection UCSC
LOC132334287P14 NC_082356.1:14656388-14659830 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P15 NC_082356.1:4312751-4316057 + LOC132334287 Specie-Specific coding under_selection UCSC
LOC132334287P16 NC_082356.1:5602374-5603193 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P17 NC_082356.1:6585810-6592286 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P18 NC_082356.1:9625935-9628069 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P19 NC_082358.1:591791-592688 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P1 NC_082341.1:53552346-53555179 - LOC132334287 Specie-Specific coding under_selection UCSC
LOC132334287P20 NC_082366.1:169221-169482 - LOC132334287 Specie-Specific non_coding - UCSC
LOC132334287P21 NC_082366.1:2642681-2645106 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P22 NC_082370.1:68828-69555 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P23 NC_082371.1:511274-512110 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P24 NC_082372.1:835939-837461 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P25 NC_082380.1:1402364-1402730 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P26 NC_082380.1:42412-44765 + LOC132334287 Specie-Specific coding under_selection UCSC
LOC132334287P27 NC_082380.1:5138625-5139148 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P28 NC_082380.1:7740155-7741202 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P29 NC_082380.1:8246421-8249800 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P2 NC_082341.1:57253423-57256898 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P30 NC_082381.1:16331586-16332077 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P31 NC_082381.1:89090246-89091018 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P3 NC_082341.1:82204859-82208353 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P4 NC_082343.1:92955446-92958366 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P5 NC_082344.1:10762265-10765670 - LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P6 NC_082344.1:13400517-13401130 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P7 NC_082344.1:23495095-23495466 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P8 NC_082345.1:19259587-19262961 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334287P9 NC_082345.1:32157663-32161125 + LOC132334287 Specie-Specific coding not_under_selection UCSC
LOC132334497P1 NC_082356.1:11849268-11851361 + LOC132334497 Orthologus coding under_selection UCSC
LOC132334497P2 NC_082356.1:12597167-12599252 + LOC132334497 Orthologus coding under_selection UCSC
LOC132334497P3 NC_082356.1:13822609-13824522 - LOC132334497 Orthologus coding under_selection UCSC
LOC132334497P4 NC_082356.1:14767742-14769655 - LOC132334497 Orthologus coding under_selection UCSC
LOC132334497P5 NC_082356.1:2876571-2876753 - LOC132334497 Orthologus non_coding - UCSC
LOC132334497P6 NC_082356.1:4227382-4227562 - LOC132334497 Orthologus non_coding - UCSC
LOC132334557P1 NC_082353.1:1882965-1883327 + LOC132334557 Specie-Specific coding under_selection UCSC
LOC132334722P1 NC_082374.1:723533-723746 + LOC132334722 Orthologus non_coding - UCSC
LOC132334968P1 NC_082370.1:122094-122252 + LOC132334968 Orthologus non_coding - UCSC
LOC132336703P1 NC_082341.1:158440284-158440560 - LOC132336703 Orthologus non_coding - UCSC
LOC132336703P2 NC_082341.1:84715126-84715311 + LOC132336703 Orthologus non_coding - UCSC
LOC132337001P1 NC_082342.1:93950672-93950842 + LOC132337001 Orthologus non_coding - UCSC
LOC132337001P2 NC_082343.1:76954331-76954501 - LOC132337001 Orthologus non_coding - UCSC
LOC132337001P3 NC_082354.1:16360879-16361059 + LOC132337001 Orthologus non_coding - UCSC
LOC132337001P4 NC_082367.1:2867844-2868020 + LOC132337001 Orthologus non_coding - UCSC
LOC132338227P1 NC_082348.1:15787123-15788050 - LOC132338227 Orthologus coding under_selection UCSC
LOC132338227P2 NC_082373.1:433280-434206 - LOC132338227 Orthologus coding under_selection UCSC
LOC132338513P1 NC_082366.1:2596435-2597046 + LOC132338513 Specie-Specific coding not_under_selection UCSC
LOC132339138P1 NC_082345.1:1596008-1597016 + LOC132339138 Orthologus coding under_selection UCSC
LOC132340016P1 NC_082353.1:4042258-4044596 + LOC132340016 Orthologus coding under_selection UCSC
LOC132340016P2 NC_082357.1:13437013-13439241 - LOC132340016 Orthologus coding not_under_selection UCSC
LOC132340103P1 NC_082371.1:2969826-2969979 - LOC132340103 Specie-Specific non_coding - UCSC
LOC132340103P2 NC_082371.1:736407-736560 - LOC132340103 Specie-Specific non_coding - UCSC
LOC132340130P1 NC_082356.1:1704282-1704739 - LOC132340130 Orthologus coding not_under_selection UCSC
LOC132340130P2 NC_082356.1:3321906-3322363 + LOC132340130 Specie-Specific coding not_under_selection UCSC
LOC132340130P3 NC_082356.1:4549554-4550011 + LOC132340130 Specie-Specific coding not_under_selection UCSC
LOC132340130P4 NC_082356.1:901308-901766 - LOC132340130 Specie-Specific coding not_under_selection UCSC
LOC132340130P5 NC_082371.1:227556-227828 - LOC132340130 Specie-Specific coding not_under_selection UCSC
LOC132340463P1 NC_082372.1:1474116-1474584 - LOC132340463 Specie-Specific non_coding - UCSC
LOC132340463P2 NC_082372.1:2771699-2772197 - LOC132340463 Specie-Specific non_coding - UCSC
LOC132340475P1 NC_082372.1:1032036-1032178 - LOC132340475 Specie-Specific non_coding - UCSC
LOC132340482P1 NC_082372.1:3008246-3008954 + LOC132340482 Specie-Specific non_coding - UCSC
LOC132340501P1 NC_082372.1:1302286-1303395 + LOC132340501 Orthologus coding under_selection UCSC
LOC132340501P2 NC_082372.1:2886087-2887195 - LOC132340501 Orthologus coding under_selection UCSC
LOC132340546P1 NC_082372.1:1991268-1993932 - LOC132340546 Specie-Specific coding under_selection UCSC
LOC132340560P1 NC_082372.1:1402914-1404133 - LOC132340560 Specie-Specific coding under_selection UCSC
LOC132340560P2 NC_082372.1:2903790-2906438 + LOC132340560 Specie-Specific coding under_selection UCSC
LOC132340597P1 NC_082356.1:13330861-13331107 - LOC132340597 Orthologus non_coding - UCSC
LOC132340597P2 NC_082372.1:553755-554932 - LOC132340597 Orthologus coding not_under_selection UCSC
LOC132340874P1 NC_082356.1:13568938-13569125 + LOC132340874 Orthologus non_coding - UCSC
LOC132340874P2 NC_082356.1:7327166-7327299 - LOC132340874 Orthologus non_coding - UCSC
LOC132340874P3 NC_082356.1:7838208-7838818 - LOC132340874 Orthologus non_coding - UCSC
LOC132340874P4 NC_082356.1:9885712-9885845 + LOC132340874 Orthologus non_coding - UCSC
LOC132340874P5 NC_082369.1:1371519-1372349 - LOC132340874 Orthologus coding under_selection UCSC
LOC132340874P6 NC_082370.1:115223-115425 - LOC132340874 Orthologus non_coding - UCSC
LOC132340874P7 NC_082372.1:418657-418916 + LOC132340874 Orthologus non_coding - UCSC
LOC132341067P1 NC_082351.1:23543620-23543928 + LOC132341067 Orthologus coding not_under_selection UCSC
LOC132341067P2 NC_082365.1:1850755-1851048 + LOC132341067 Orthologus coding not_under_selection UCSC
LOC132342042P1 NC_082381.1:28799566-28799697 - LOC132342042 Specie-Specific non_coding - UCSC
LOC132342047P1 NC_082381.1:22089065-22089259 + LOC132342047 Orthologus non_coding - UCSC
MKRN2P1 NC_082355.1:6874776-6875013 - MKRN2 Orthologus non_coding - UCSC
MRPL9P1 NC_082343.1:116903619-116903956 - MRPL9 Specie-Specific non_coding - UCSC
NR2F6P1 NC_082381.1:103878-104076 + NR2F6 Orthologus non_coding - UCSC
PDRG1P1 NC_082341.1:53293002-53293562 - PDRG1 Specie-Specific coding not_under_selection UCSC
PLRG1P1 NC_082365.1:625167-625669 + PLRG1 Orthologus coding under_selection UCSC
PPIL4P1 NC_082345.1:1603274-1604616 + PPIL4 Orthologus coding under_selection UCSC
PPIL4P2 NC_082352.1:5233187-5234177 - PPIL4 Orthologus coding not_under_selection UCSC
PRPF6P1 NC_082344.1:22996413-22999325 + PRPF6 Orthologus coding under_selection UCSC
PWWP3AP1 NC_082341.1:2821879-2823882 + PWWP3A Orthologus coding not_under_selection UCSC
PWWP3AP2 NC_082343.1:79505199-79508343 + PWWP3A Specie-Specific coding under_selection UCSC
PWWP3AP3 NC_082381.1:32387402-32388439 + PWWP3A Orthologus coding under_selection UCSC
RAP2CP1 NC_082350.1:26012137-26012500 - RAP2C Orthologus coding not_under_selection UCSC
RHOCP1 NC_082343.1:108533855-108534233 + RHOC Orthologus coding not_under_selection UCSC
RPAP2P1 NC_082344.1:56830103-56830492 - RPAP2 Specie-Specific coding not_under_selection UCSC
RPS19P1 NC_082380.1:6320013-6320302 - RPS19 Specie-Specific coding not_under_selection UCSC
RPS27AP1 NC_082367.1:1846772-1847227 + RPS27A Orthologus coding not_under_selection UCSC
RPS6P1 NC_082381.1:77298496-77299188 - RPS6 Orthologus coding not_under_selection UCSC
SAP30P1 NC_082346.1:38184710-38185068 + SAP30 Orthologus non_coding - UCSC
SF3A3P1 NC_082346.1:63973269-63974879 - SF3A3 Orthologus coding not_under_selection UCSC
SHCBP1P1 NC_082346.1:58009005-58009252 - SHCBP1 Orthologus coding not_under_selection UCSC
SLU7P1 NC_082368.1:3255137-3257248 - SLU7 Orthologus coding under_selection UCSC
SNW1P1 NC_082353.1:3752287-3754458 - SNW1 Orthologus coding under_selection UCSC
SP1P1 NC_082341.1:31242154-31242404 - SP1 Orthologus coding not_under_selection UCSC
SP1P2 NC_082348.1:19745590-19745866 + SP1 Orthologus coding under_selection UCSC
SP1P3 NC_082348.1:21090437-21090665 + SP1 Orthologus non_coding - UCSC
SUMF1P1 NC_082341.1:22446928-22447205 + SUMF1 Orthologus coding not_under_selection UCSC
TDP2P1 NC_082381.1:85293740-85294181 - TDP2 Orthologus non_coding - UCSC
TJP1P1 NC_082341.1:82741828-82742059 + TJP1 Orthologus non_coding - UCSC
TOMM7P1 NC_082357.1:5342308-5342690 - TOMM7 Specie-Specific non_coding - UCSC
TTC3P1 NC_082342.1:1136412-1136557 + TTC3 Orthologus non_coding - UCSC
TUBA8P1 NC_082345.1:74639092-74639994 - TUBA8 Orthologus coding not_under_selection UCSC
UBE2NP1 NC_082348.1:5393751-5393959 + UBE2N Orthologus non_coding - UCSC
USP48P1 NC_082342.1:89806051-89806357 - USP48 Orthologus coding not_under_selection UCSC
YJU2P1 NC_082344.1:77097596-77098560 + YJU2 Orthologus coding under_selection UCSC
ZNF148P1 NC_082349.1:21555436-21555643 + ZNF148 Orthologus non_coding - UCSC