RCPedia: Genes

Warning (2): rename(/var/www/logs/error.log,/var/www/logs/error.log.1788422996): No such file or directory [CORE/src/Log/Engine/FileLog.php, line 206]Code Context        } else {
            $result = rename($filePath, $filePath . '.' . time());
        }
rename - [internal], line ??
Cake\Log\Engine\FileLog::_rotateFile() - CORE/src/Log/Engine/FileLog.php, line 206
Cake\Log\Engine\FileLog::log() - CORE/src/Log/Engine/FileLog.php, line 134
Cake\Log\Log::write() - CORE/src/Log/Log.php, line 392
Cake\Log\Log::warning() - CORE/src/Log/Log.php, line 477
DebugKit\ToolbarService::isSuspiciouslyProduction() - ROOT/vendor/cakephp/debug_kit/src/ToolbarService.php, line 166
DebugKit\ToolbarService::isEnabled() - ROOT/vendor/cakephp/debug_kit/src/ToolbarService.php, line 105
DebugKit\Plugin::bootstrap() - ROOT/vendor/cakephp/debug_kit/src/Plugin.php, line 48
Cake\Http\BaseApplication::pluginBootstrap() - CORE/src/Http/BaseApplication.php, line 182
Cake\Http\Server::bootstrap() - CORE/src/Http/Server.php, line 111
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 79
[main] - ROOT/html/index.php, line 40

RCPedia: Genes

Summary

Gene Name	SFR1	Plot displaying the genomic locations of a parental gene (in scaffold_m19_p_5) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Phyllostomus discolor
Full Name	N/A
Also known as	NULL
Coordinate	scaffold_m19_p_5:19248209-19252774
Strand	-
Gene summary	N/A

Retrocopy(s) from SFR1

Retroname	Coord	Strand	Genomic Region	ENSG
SFR1P1	scaffold_m19_p_2:41212783-41213842	+	Intergenic	N/A	UCSC
SFR1P2	scaffold_m19_p_3:51048452-51048856	+	Intragenic	N/A	UCSC
SFR1P3	scaffold_m19_p_7:137479103-137479382	-	Intergenic	N/A	UCSC

Expression

Transcript Sequences

>SFR1_x1
GGGAAACCGAGGGGGCAGTTTAGACTAAGGAGGTCCCTGCCCCGTATTCAGCAAGGGCCGTGCGTGCCTCAGACGTCTGCATTCGGGAACGACGTCTTCTTCTTCAAGGATTGTTCCGCTCCCTTTGCTGCACCGCAGCAAATCCCTCTGGGCCACCTTTTCCCTCAGACTCGAAGCCCAGCTGAGGAGATCTAAACTTTGAGGTAAACGCGGTAGAACACCTGTGGCCGGGCCGCCGCCACGGCGGCAGCCAAGGCTAGAAATGAGCTCGACTGCGTTCGCCGGGGCTCTTCGGGAGGTGGCTAAACGAGTCGCAGTCTCAACAGGCCGTTTAACCTAGCGCTGCTCTCCTAGCCGGAGAGTTTACAGGCTGTAACTTGAACACACGGCCCTTCTCGCACACAGCACTCCTGGTGCTGTCAATTCTGAGGAAAGTCCCGGGGCTCTGACGAGAGAAGACGTGAGAAAAATGGGAGCCAAGAGAATGGGAGGGGCATTCTCAGACACACTTCATCAACACAAAAACAAAGTGGCAGGGAGAAAGGTTTTGCAGGGAAAGAAGAGGGAGGGGAAGCCGTAAAGAAAAGCGCGCTCCCTTGGAATCAATCTCAGAGAAGACGAGCCAGACCGCGAGGACGGCTACTGAGGCTCGCGGCTGCGCGCGCTCAGCCCCGGGGCTCCAGAGCGCCCGGCGCCCCAGAGACGCGCGCGTCACTCAATCTGACCAATCACAAGTCTCTACCATCTCCTACGTTGCCCCTCCCCGCCCGCGCTGGCTCGCAAAGGCACCAGGCcgcgcgcgcgcgcgcgcgcgcgtgcgcAGTCCCGCCGCTTTGGGGCGCTGAGTGAAGCGGCGCTCCCAGcgtcagtcaatccgtcagtcaatccgGCCAATCGCGAGCTGCTTCCGTCTCTCCCGAAGCTCTGCCGCTGGAACGGGAGCGGCGGGGCGGGTTTTCTGCGCTCTGGGGACGGCGGAGGGAGGTAGCGTAGGGGCTGGCGACTGAAAGTGCGGGAGCTGAATTGCCTCGGGGTCTGCGGTGCAGTTGAATAGCGATCTCTTTCCGTGGTCAGGGGACCTCTCAACTGCACCCCGGCCTGGCGTCTCCAGGGCTGGTGCGGTTTTCGGCaggggtgggaggggtgggaggggagggagggCTTCTTccccccccccccccccccacccGGGAAAGTTGATGCCTTTGTTTCAGGAAACAAACTTGAGTCGACTCTGCTTCTCAGGGTTTTCTCGCTACTTAAAAGAAAAGAAAACGATACGGACAGACTGTAACATTCATCTGCAGTTGTGCTCCTTATCCCTCAGGCCCGGAGGGTCATTGCTTCTAATCACCCAGCCCTCACGGTTTAGGGTAGTGGGAAAACTCATGTCCTGCGCGTCAAGATTTCAGTTATATTTCCTTTCATTCTGAAGCTGGCGAAACGAAATGAAAGCGTTCTTAACTATCCAACGTTTTTCTTCTCCTCGACCCCCCTCCGGCAGGTTTTGAAGGTATCTTGATGAAAACAAATGGAGGGTCTTTATATGCGAGGCCAGCTAGTCTGCCATGGAAAAACTAGTAGTTAACCATGTGGACCGCCACAGCCTTATTTAGGAGGGTAAATGGGAAACGACAGCAAAAAGCAAGAATGAATCACAGCTAAATGAAAGAGGAAGATGCTGGCTTACTTGTTGATGTTGCCCGCAATAAAACAATTCTTTGATAAAAAGTGAGGGATATATAGAGGTGTGGGTTAATTCGATTTCCATTTTGTGATTATCTTTTGTTTTTTAGAGGTAAACCGAGACTTCATATTCAAGATGGAAAGGCCCTCAGACCCAGCTGTGATTCCACCTGGCACTCCACAAGGCTGTGCCAGTGTACCATCTCCCCACACAAGTAGTTCAAGAAAACAAGTAGGAAAATCTTAGTTCTTTCAATGGATCAATTCTGTATTTCTGGCTATTGTAGCAGTGGTGGTTTTAAATCTATTGAAGATTGTTAATGAACGTAATGTGTAGCATTAATAAATGTATTAAGTAATTTTAGATCTTTCTCCTATGATGATGTATTTGACTTTTCCCCACCCCCAAAATTTCATTCTGTATTATTTAGTTTCACATCAGGTATTTATAACATTGCAAATGGAAGAAGTTTGAATCTGCAGTGTCATGAAGGTCTTTGGTGGCAGGATCTAGGTCTTTCCCAAAATTTGTAACTCTGAAGCACCTAGAGCAGCGTCAGGCATGTGCTAAGTTGCTGAACAAATGTTTGTGATTACTGGGGTAAGTGTCTCAACATTGCTGTAGAAGAGTGCTGATGTTGCTAAAATCAAATAAAACTAATGGAGCTTCTAGGAATTTAAGACATTTTGTGATGGTTACTGAAGATATATGGAGACAGAAAGCCATCTAGTGGTGTGTATCTTTATTTCCAGTAGGTTTATTTGCATCAAGAATGTTTCTCTTGATTAACATTATTAATGTTTATGCCTTTTACAGCCTATGAGTGCAACACTTAGAGAACGGTTAAGGAAAACTAGATCTTCATTTAATTCCTGTTACAGTGTGGTAAAACGTCTTAAAGTGGAGAATGAGGAAAACGATCAGACCTTTTCAGAGAAACCATCTTCAACAGAAGAAAGCTGTTTGGAATTTCAAGATAATTTTAAACACATAGACAGTGAATTTGAAGAAAGTTCATATTTGAAAAATACCTTTAAGAATATCAATGCATGTGAATCAAAGTCACTTGATACTGAATCTTGCAGTGGTCTGCAAAATGATTTTGATGAGAATCTTCCCAAAAAAGGATTAAATGAAGAAAAGGCAAAATTGGTGAGGCAGGTTCGGGAAAAAGAAGACCTTCTTCGGAGGCTAAAACTAGTTAAAATGTATAGATCAAAGAATGACCTGTCTCAGTTACAGCTGTTAATAAAGAAATGGAGACGCTGTAGCCAACTGTTGCTTTATGAGTTGCAGTCAGCTATGTCTGAGGAGAACAAGAAACTCAGCCTTACTCAGTTGATAGACCACTATGGATTGGATGATAAATTGCTACACTATAACAGAAATGAAGAAGAATTTGTAGGTGTTTAATTCATAATTTCTTCTCCAGAATATCTTTGACACTTACATCTTAAAAAATACTTATACATTTTAAGGAGAATATGAACCATTAGGGCTTAAAGAAAGGTATTTGGTGAACATCAATTTAGGGCATTCTGTTAGAtaaaatataaattctaaaatgaaaatttagtattttggataaatttgccaaagaaaatttgacatttaaaGAAACGTGAAAAACTTTTACTCATGTTTTAAAACATAATTCAGTTCTGGAAGTCAGTTGTAATACATTATTTTGTTTATTATGGTAAAAGTAGTTTTTTTTATTAAATGTTAAAAAATAGCCAATCAGGTGAATGTCTAAACCTAAATTGGTCTAAAAATGCCTGCCTTTCTCCTAAGTTTATGAACTTTGTTTCCATCCATTTACCACATATTTCCATCTGGATGGTCTCTTGAGTAATTAAACTCATAGGTCC

>SFR1_x2
ATGGAAAGGCCCTCAGACCCAGCTGTGATTCCACCTGGCACTCCACAAGGCTGTGCCAGTGTACCATCTCCCCACACAAGTAGTTCAAGAAAACAACCTATGAGTGCAACACTTAGAGAACGGTTAAGGAAAACTAGATCTTCATTTAATTCCTGTTACAGTGTGGTAAAACGTCTTAAAGTGGAGAATGAGGAAAACGATCAGACCTTTTCAGAGAAACCATCTTCAACAGAAGAAAGCTGTTTGGAATTTCAAGATAATTTTAAACACATAGACAGTGAATTTGAAGAAAGTTCATATTTGAAAAATACCTTTAAGAATATCAATGCATGTGAATCAAAGTCACTTGATACTGAATCTTGCAGTGGTCTGCAAAATGATTTTGATGAGAATCTTCCCAAAAAAGGATTAAATGAAGAAAAGGCAAAATTGGTGAGGCAGGTTCGGGAAAAAGAAGACCTTCTTCGGAGGCTAAAACTAGTTAAAATGTATAGATCAAAGAATGACCTGTCTCAGTTACAGCTGTTAATAAAGAAATGGAGACGCTGTAGCCAACTGTTGCTTTATGAGTTGCAGTCAGCTATGTCTGAGGAGAACAAGAAACTCAGCCTTACTCAGTTGATAGACCACTATGGATTGGATGATAAATTGCTACACTATAACAGAAATGAAGAAGAATTTGTAGGTGTTTAA